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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051728 through 18771 annotations produced 1 hits



(CG31728):

Annotation Number : CG31728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051728
Gbrowse : chr2L:13255636-13257427 (+) // 100.0 //
Probeset : 1635374_at
Accessions : protein= NP_723797;, nucleotide= NM_165031;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051728.
Homophila reports that CG31728 is a close match (5e-15) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 2.30None
Head11 ± 31 of 4 6.10None
Eye9 ± 23 of 4 5.14None
Thoracicoabdominal ganglion5 ± 10 of 4 2.60None
Salivary gland14 ± 40 of 4 7.52None
Crop7 ± 10 of 4 4.10Up
Midgut13 ± 10 of 4 7.00Up
Tubule8 ± 10 of 4 4.60Up
Hindgut14 ± 13 of 4 7.70Up
Heart4 ± 11 of 4 2.22None
Fat body9 ± 30 of 4 4.94Up
Ovary2 ± 00 of 4 1.40None
Testis2 ± 10 of 4 1.10None
Male accessory glands3 ± 10 of 4 2.00None
Virgin spermatheca6 ± 10 of 4 3.14Up
Mated spermatheca5 ± 10 of 4 2.94None
Adult carcass9 ± 20 of 4 5.10Up
Larval CNS4 ± 22 of 4 2.55None
Larval Salivary gland38 ± 44 of 419.79Up
Larval midgut48 ± 74 of 425.14Up
Larval tubule10 ± 21 of 4 5.40Up
Larval hindgut23 ± 74 of 412.40None
Larval fat body9 ± 20 of 4 5.00Up
Larval trachea1143 ± 2064 of 4593.90Up
Larval carcass30 ± 54 of 416.01Up
S2 cells (growing)2 ± 10 of 4 1.19None
Whole fly1 ± 00 of 4

Looking for FBgn0051728. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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