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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051729 through 18771 annotations produced 1 hits



(CG31729):

Annotation Number : CG31729
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051729
Gbrowse : chr2L:13290005-13301660 (+) // 100.0 //
Probeset : 1636101_a_at
Accessions : protein= NP_609634; /// NP_723806;, nucleotide= NM_135790; /// NM_165038;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred f
FlyMine data for FBgn0051729.
Homophila reports that CG31729 is a close match (4e-63) to human gene ATP8B1;BRIC;FIC1;PFIC1 (NP_005594), a gene associated with Cholestasis, benign recurrent intrahepatic, 243300 (3);Cholestasis, progressive familial intrahepatic 1, 211600 (3).
VDRC has 2 RNAi stocks for FBgn0051729 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain283 ± 214 of 4 1.40Up
Head381 ± 264 of 4 1.80Up
Eye157 ± 74 of 4 0.76Down
Thoracicoabdominal ganglion249 ± 174 of 4 1.20None
Salivary gland581 ± 364 of 4 2.82Up
Crop255 ± 204 of 4 1.20None
Midgut258 ± 164 of 4 1.30Up
Tubule471 ± 194 of 4 2.30Up
Hindgut393 ± 144 of 4 1.90Up
Heart87 ± 84 of 4 0.42Down
Fat body349 ± 664 of 4 1.69Up
Ovary284 ± 154 of 4 1.40Up
Testis201 ± 94 of 4 1.00None
Male accessory glands755 ± 284 of 4 3.70Up
Virgin spermatheca267 ± 374 of 4 1.29None
Mated spermatheca274 ± 244 of 4 1.33None
Adult carcass215 ± 284 of 4 1.00None
Larval CNS303 ± 324 of 4 1.47Up
Larval Salivary gland354 ± 484 of 4 1.71None
Larval midgut450 ± 64 of 4 2.18Up
Larval tubule336 ± 324 of 4 1.60Up
Larval hindgut760 ± 274 of 4 3.68Up
Larval fat body148 ± 104 of 4 0.70Down
Larval trachea78 ± 34 of 4 0.38Down
Larval carcass285 ± 334 of 4 1.38None
S2 cells (growing)464 ± 234 of 4 2.25Up
Whole fly206 ± 84 of 4

Looking for FBgn0051729. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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