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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051739 through 18771 annotations produced 1 hits



/// midway (CG31739 /// mdy):

Annotation Number : CG31739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051739
Gbrowse : chr2L:16827097-16831705 (+) // 100.0 //
Probeset : 1629374_at
Accessions : protein= NP_724018;, nucleotide= NM_165196;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0051739.
BDGP gene expression has embryonic in situ data for CG31739: 4 pix of staining in 1 body parts.
Homophila reports that CG31739 is a close match (2e-149) to human gene ASPRS. LBSL;DARS2 (NP_060592), a gene associated with Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, 611105 (3).
VDRC has 2 RNAi stocks for FBgn0051739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 34 of 4 1.30Up
Head81 54 of 4 0.70Down
Eye45 34 of 4 0.38Down
Thoracicoabdominal ganglion123 34 of 4 1.00None
Salivary gland72 44 of 4 0.61Down
Crop90 24 of 4 0.80Down
Midgut92 34 of 4 0.80Down
Tubule116 44 of 4 1.00None
Hindgut88 34 of 4 0.70Down
Heart74 34 of 4 0.62Down
Fat body113 134 of 4 0.95None
Ovary260 44 of 4 2.20Up
Testis138 74 of 4 1.20None
Male accessory glands61 14 of 4 0.50Down
Virgin spermatheca70 44 of 4 0.59Down
Mated spermatheca70 34 of 4 0.59Down
Adult carcass62 54 of 4 0.50Down
Larval CNS353 254 of 4 2.97Up
Larval Salivary gland80 44 of 4 0.67Down
Larval midgut91 74 of 4 0.77Down
Larval tubule93 24 of 4 0.80Down
Larval hindgut131 64 of 4 1.11None
Larval fat body54 74 of 4 0.50Down
Larval trachea94 134 of 4 0.79Down
Larval carcass97 54 of 4 0.82Down
S2 cells (growing)235 94 of 4 1.98Up
Whole fly119 54 of 4

Looking for FBgn0051739. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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