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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051752 through 18771 annotations produced 1 hits


(CG31752):

Annotation Number : CG31752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051752
Gbrowse : chr2L:18839928-18841168 (-) // 100.0 //
Probeset : 1631889_at
Accessions : protein= NP_724136;, nucleotide= NM_165266;
FlyMine data for FBgn0051752.
VDRC has 3 RNAi stocks for FBgn0051752 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.20Down
Eye2 ± 00 of 4 0.12Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.37Down
Crop1 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart3 ± 11 of 4 0.17Down
Fat body8 ± 60 of 4 0.45Down
Ovary1 ± 00 of 4 0.10Down
Testis425 ± 194 of 422.30Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.25Down
Mated spermatheca5 ± 10 of 4 0.26Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS4 ± 11 of 4 0.26Down
Larval Salivary gland4 ± 20 of 4 0.24Down
Larval midgut3 ± 10 of 4 0.19Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.13Down
Larval fat body62 ± 412 of 4 3.30None
Larval trachea5 ± 31 of 4 0.26Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly19 ± 14 of 4

Looking for FBgn0051752. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime