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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051760 through 18771 annotations produced 1 hits



(CG31760):

Annotation Number : CG31760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051760
Gbrowse : chr2L:12142783-12170217 (+) // 99.91 //
Probeset : 1624667_at
Accessions : protein= NP_001162962; /// NP_723730;, nucleotide= NM_001169491; /// NM_164996;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0051760.
BioGrid reports that CG31760 interacts with CG5027 .
VDRC has 2 RNAi stocks for FBgn0051760 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain787 ± 114 of 446.60Up
Head118 ± 154 of 4 7.00Up
Eye25 ± 34 of 4 1.50None
Thoracicoabdominal ganglion734 ± 374 of 443.40Up
Salivary gland15 ± 61 of 4 0.94None
Crop7 ± 11 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule14 ± 03 of 4 0.80Down
Hindgut8 ± 23 of 4 0.50None
Heart4 ± 10 of 4 0.24Down
Fat body19 ± 74 of 4 1.16None
Ovary0 ± 00 of 4 0.00Down
Testis4 ± 01 of 4 0.20Down
Male accessory glands206 ± 194 of 412.20Up
Virgin spermatheca18 ± 03 of 4 1.08None
Mated spermatheca23 ± 53 of 4 1.40None
Adult carcass15 ± 20 of 4 0.90None
Larval CNS323 ± 254 of 419.17Up
Larval Salivary gland7 ± 10 of 4 0.41Down
Larval midgut2 ± 10 of 4 0.13Down
Larval tubule8 ± 03 of 4 0.50Down
Larval hindgut5 ± 01 of 4 0.31Down
Larval fat body7 ± 10 of 4 0.40Down
Larval trachea4 ± 21 of 4 0.24Down
Larval carcass6 ± 22 of 4 0.36Down
S2 cells (growing)3 ± 00 of 4 0.23Down
Whole fly16 ± 04 of 4

Looking for FBgn0051760. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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