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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051781 through 18771 annotations produced 2 hits



(CG31781):

Annotation Number : CT35026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051781
Gbrowse : chr2L:16869319-16870181 (+) // 100.0 //
Probeset : 1637394_s_at
Accessions : protein= NP_001162993; /// NP_609819;, nucleotide= NM_001169522; /// NM_135975;
FlyMine data for FBgn0051781.
BDGP gene expression has embryonic in situ data for CG31781: 14 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0051781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.10Down
Head84 184 of 4 0.40None
Eye10 02 of 4 0.05Down
Thoracicoabdominal ganglion216 274 of 4 1.10None
Salivary gland3 00 of 4 0.02Down
Crop286 294 of 4 1.40None
Midgut17 20 of 4 0.10Down
Tubule2 00 of 4 0.00Down
Hindgut297 194 of 4 1.50None
Heart242 254 of 4 1.21None
Fat body9 30 of 4 0.05Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands20 50 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca3 20 of 4 0.02Down
Adult carcass464 644 of 4 2.30Up
Larval CNS3 00 of 4 0.02Down
Larval Salivary gland12 10 of 4 0.06Down
Larval midgut1 00 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut24 31 of 4 0.12Down
Larval fat body0 00 of 4 0.00Down
Larval trachea10 00 of 4 0.05Down
Larval carcass57 84 of 4 0.29None
S2 cells (growing)1 00 of 4 0.01Down
Whole fly200 454 of 4



(CG31781):

Annotation Number : CG31781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051781
Gbrowse : chr2L:16869486-16878301 (+) // 100.0 //
Probeset : 1623117_at
Accessions : protein= NP_001162993; /// NP_609819;, nucleotide= NM_001169522; /// NM_135975;
FlyMine data for FBgn0051781.
BDGP gene expression has embryonic in situ data for CG31781: 14 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0051781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 34 of 4 0.10Down
Head336 344 of 4 0.60Down
Eye34 54 of 4 0.06Down
Thoracicoabdominal ganglion1328 524 of 4 2.30Up
Salivary gland16 10 of 4 0.03Down
Crop969 194 of 4 1.60Up
Midgut40 14 of 4 0.10Down
Tubule7 10 of 4 0.00Down
Hindgut756 294 of 4 1.30None
Heart678 894 of 4 1.15None
Fat body43 184 of 4 0.07Down
Ovary7 01 of 4 0.00Down
Testis25 14 of 4 0.00Down
Male accessory glands81 74 of 4 0.10Down
Virgin spermatheca25 13 of 4 0.04Down
Mated spermatheca33 14 of 4 0.06Down
Adult carcass1752 1174 of 4 3.00Up
Larval CNS24 54 of 4 0.04Down
Larval Salivary gland50 94 of 4 0.09Down
Larval midgut25 23 of 4 0.04Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut110 64 of 4 0.19Down
Larval fat body3 00 of 4 0.00Down
Larval trachea24 44 of 4 0.04Down
Larval carcass287 294 of 4 0.49Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly588 674 of 4

Looking for FBgn0051781. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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