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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051787 through 18771 annotations produced 1 hits


(CG31787):

Annotation Number : CG31787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051787
Gbrowse : chr2L:18284935-18285684 (-) // 100.0 //
Probeset : 1637904_at
Accessions : protein= NP_724105;, nucleotide= NM_165248;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005102 // receptor binding // inferred from sequence or structural similarity
FlyMine data for FBgn0051787.
VDRC has 1 RNAi stocks for FBgn0051787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 11 of 4 0.00Down
Eye3 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland11 ± 31 of 4 0.09Down
Crop1 ± 00 of 4 0.00Down
Midgut7 ± 22 of 4 0.10Down
Tubule3 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body5 ± 01 of 4 0.04Down
Ovary3 ± 01 of 4 0.00Down
Testis1122 ± 584 of 4 8.80Up
Male accessory glands9 ± 02 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.02Down
Adult carcass10 ± 32 of 4 0.10Down
Larval CNS3 ± 03 of 4 0.03Down
Larval Salivary gland4 ± 10 of 4 0.03Down
Larval midgut7 ± 00 of 4 0.06Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut4 ± 02 of 4 0.03Down
Larval fat body177 ± 754 of 4 1.40None
Larval trachea6 ± 31 of 4 0.05Down
Larval carcass4 ± 00 of 4 0.03Down
S2 cells (growing)3 ± 12 of 4 0.03Down
Whole fly128 ± 64 of 4

Looking for FBgn0051787. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime