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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051788 through 18771 annotations produced 1 hits


Annotation Number : CG31788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051788
Gbrowse : chr2L:18257492-18257892 (-) // 100.0 //
Probeset : 1634126_at
Accessions : protein= NP_724104;, nucleotide= NM_165247;
FlyMine data for FBgn0051788.
VDRC has 1 RNAi stocks for FBgn0051788 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 13 of 4 0.00Down
Head3 21 of 4 0.00Down
Eye1 00 of 4 0.00Down
Thoracicoabdominal ganglion4 02 of 4 0.00Down
Salivary gland12 50 of 4 0.05Down
Crop2 00 of 4 0.00Down
Midgut3 11 of 4 0.00Down
Tubule4 01 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart4 11 of 4 0.02Down
Fat body3 12 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis2506 864 of 4 9.80Up
Male accessory glands30 94 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca4 11 of 4 0.02Down
Adult carcass13 43 of 4 0.10Down
Larval CNS2 02 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut5 11 of 4 0.02Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut3 03 of 4 0.01Down
Larval fat body548 3034 of 4 2.10None
Larval trachea13 94 of 4 0.05Down
Larval carcass3 11 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly255 114 of 4

Looking for FBgn0051788. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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