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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051792 through 18771 annotations produced 1 hits



(CG31792):

Annotation Number : CG31792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051792
Gbrowse : chr2L:18997994-19002483 (+) // 100.0 //
Probeset : 1635700_at
Accessions : protein= NP_724148;, nucleotide= NM_165270;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0051792.
Homophila reports that CG31792 is a close match (7e-13) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
BioGrid reports that CG31792 interacts with CG5814 .
TRiP has 1 RNAi stocks for FBgn0051792 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head0 00 of 4 0.20None
Eye0 00 of 4 0.19None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland5 20 of 4 1.38None
Crop1 00 of 4 0.30None
Midgut10 30 of 4 2.70None
Tubule218 194 of 457.50Up
Hindgut3 10 of 4 0.80None
Heart0 00 of 4 0.09None
Fat body3 50 of 4 1.01None
Ovary0 00 of 4 0.10None
Testis4 00 of 4 1.30None
Male accessory glands2 00 of 4 0.60None
Virgin spermatheca0 00 of 4 0.21None
Mated spermatheca1 00 of 4 0.32None
Adult carcass5 20 of 4 1.50None
Larval CNS0 00 of 4 0.15None
Larval Salivary gland1 00 of 4 0.49None
Larval midgut126 144 of 433.18Up
Larval tubule774 454 of 4203.80Up
Larval hindgut19 04 of 4 4.99Up
Larval fat body3 20 of 4 1.00None
Larval trachea2 10 of 4 0.72None
Larval carcass0 00 of 4 0.18None
S2 cells (growing)0 00 of 4 0.22None
Whole fly3 10 of 4

Looking for FBgn0051792. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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