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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051793 through 18771 annotations produced 1 hits



(CG31793):

Annotation Number : CG31793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051793
Gbrowse : chr2L:19003409-19008231 (+) // 100.0 //
Probeset : 1631763_at
Accessions : protein= NP_609930;, nucleotide= NM_136086;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transpo
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0051793.
BDGP gene expression has embryonic in situ data for CG31793: 4 pix of staining in 1 body parts.
Homophila reports that CG31793 is a close match (3e-11) to human gene ABCA3;ABC3;SMDP3 (NP_001080), a gene associated with Surfactant metabolism dysfunction, pulmonary, 3, 610921 (3).
TRiP has 1 RNAi stocks for FBgn0051793 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 24 of 4 1.50Up
Head75 64 of 4 1.60Up
Eye73 14 of 4 1.51Up
Thoracicoabdominal ganglion94 34 of 4 1.90Up
Salivary gland44 23 of 4 0.92None
Crop100 134 of 4 2.10Up
Midgut76 24 of 4 1.60Up
Tubule46 14 of 4 0.90None
Hindgut64 54 of 4 1.30None
Heart251 94 of 4 5.17Up
Fat body189 164 of 4 3.89Up
Ovary67 34 of 4 1.40Up
Testis13 14 of 4 0.30Down
Male accessory glands7 30 of 4 0.10Down
Virgin spermatheca120 134 of 4 2.47Up
Mated spermatheca96 44 of 4 1.98Up
Adult carcass180 104 of 4 3.70Up
Larval CNS47 84 of 4 0.98None
Larval Salivary gland16 31 of 4 0.34Down
Larval midgut52 34 of 4 1.08None
Larval tubule29 54 of 4 0.60Down
Larval hindgut60 44 of 4 1.25None
Larval fat body29 44 of 4 0.60Down
Larval trachea49 84 of 4 1.01None
Larval carcass37 44 of 4 0.77None
S2 cells (growing)64 24 of 4 1.33Up
Whole fly48 34 of 4

Looking for FBgn0051793. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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