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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051800 through 18771 annotations produced 1 hits


Annotation Number : CG31800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051800
Gbrowse : chr2L:19033656-19034456 (-) // 100.0 //
Probeset : 1635027_at
Accessions : protein= NP_724152;, nucleotide= NM_165272;
FlyMine data for FBgn0051800.
VDRC has 2 RNAi stocks for FBgn0051800 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain330 34 of 4 1.50Up
Head244 84 of 4 1.10None
Eye309 84 of 4 1.45Up
Thoracicoabdominal ganglion302 54 of 4 1.40Up
Salivary gland271 104 of 4 1.27Up
Crop229 64 of 4 1.10None
Midgut175 34 of 4 0.80Down
Tubule267 124 of 4 1.20Up
Hindgut256 74 of 4 1.20Up
Heart318 84 of 4 1.49Up
Fat body211 54 of 4 0.99None
Ovary205 24 of 4 1.00None
Testis301 54 of 4 1.40Up
Male accessory glands254 134 of 4 1.20None
Virgin spermatheca183 64 of 4 0.86None
Mated spermatheca224 94 of 4 1.05None
Adult carcass214 134 of 4 1.00None
Larval CNS224 94 of 4 1.05None
Larval Salivary gland200 114 of 4 0.94None
Larval midgut93 54 of 4 0.44Down
Larval tubule111 24 of 4 0.50Down
Larval hindgut178 74 of 4 0.83None
Larval fat body141 94 of 4 0.70Down
Larval trachea292 154 of 4 1.37Up
Larval carcass136 84 of 4 0.64Down
S2 cells (growing)306 24 of 4 1.43Up
Whole fly213 124 of 4

Looking for FBgn0051800. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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