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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051807 through 18771 annotations produced 1 hits


(CG31807):

Annotation Number : CG31807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051807
Gbrowse : chr2L:16681898-16682366 (-) // 100.0 //
Probeset : 1630746_at
Accessions : protein= NP_723984;, nucleotide= NM_165170;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0051807.
VDRC has 1 RNAi stocks for FBgn0051807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.23Down
Crop2 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.04Down
Fat body3 ± 30 of 4 0.17Down
Ovary13 ± 14 of 4 0.60Down
Testis248 ± 54 of 411.20Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.22Down
Larval Salivary gland2 ± 00 of 4 0.09Down
Larval midgut2 ± 00 of 4 0.10Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.09Down
Larval fat body50 ± 133 of 4 2.30None
Larval trachea4 ± 30 of 4 0.19Down
Larval carcass1 ± 00 of 4 0.07Down
S2 cells (growing)3 ± 10 of 4 0.17Down
Whole fly22 ± 14 of 4

Looking for FBgn0051807. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime