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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051809 through 18771 annotations produced 2 hits



/// (CG31809 /// CG31810):

Annotation Number : CG31809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051809 /// FBgn0051810
Gbrowse : chr2L:16853745-16854902 (-) // 100.0 // /// chr2L:16849144-16850280 (-) // 96.72 //
Probeset : 1630244_s_at
Accessions : protein= NP_001097168; /// NP_724023;, nucleotide= NM_001103698; /// NM_165198;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051809 /// FBgn0051810.
Homophila reports that CG31809 is a close match (7e-21) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head32 ± 44 of 4 1.10None
Eye12 ± 42 of 4 0.42Down
Thoracicoabdominal ganglion16 ± 14 of 4 0.60Down
Salivary gland2 ± 00 of 4 0.10Down
Crop3046 ± 1194 of 4106.20Up
Midgut186 ± 154 of 4 6.50Up
Tubule6 ± 00 of 4 0.20Down
Hindgut458 ± 54 of 416.00Up
Heart25 ± 34 of 4 0.88None
Fat body37 ± 54 of 4 1.30None
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.16Down
Mated spermatheca7 ± 20 of 4 0.25Down
Adult carcass36 ± 24 of 4 1.30None
Larval CNS3 ± 31 of 4 0.13Down
Larval Salivary gland1060 ± 754 of 437.00Up
Larval midgut42 ± 44 of 4 1.49Up
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut22 ± 14 of 4 0.79None
Larval fat body5 ± 10 of 4 0.20Down
Larval trachea2 ± 20 of 4 0.09Down
Larval carcass67 ± 194 of 4 2.36None
S2 cells (growing)2 ± 10 of 4 0.10Down
Whole fly28 ± 24 of 4



(CG31809):

Annotation Number : CG31809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051809
Gbrowse : chr2L:16853745-16854902 (-) // 100.0 // /// chr2L:16849144-16850280 (-) // 96.72 //
Probeset : 1641412_at
Accessions : protein= NP_001097168;, nucleotide= NM_001103698;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051809.
Homophila reports that CG31809 is a close match (7e-21) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).
VDRC has 4 RNAi stocks for FBgn0051809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head49 ± 64 of 4 5.50Up
Eye22 ± 43 of 4 2.48None
Thoracicoabdominal ganglion23 ± 24 of 4 2.60Up
Salivary gland7 ± 20 of 4 0.80None
Crop74 ± 84 of 4 8.20Up
Midgut13 ± 20 of 4 1.50None
Tubule5 ± 10 of 4 0.60Down
Hindgut74 ± 54 of 4 8.20Up
Heart3 ± 00 of 4 0.41None
Fat body4 ± 20 of 4 0.48None
Ovary2 ± 01 of 4 0.20None
Testis1 ± 00 of 4 0.20None
Male accessory glands2 ± 10 of 4 0.30None
Virgin spermatheca2 ± 00 of 4 0.28None
Mated spermatheca2 ± 00 of 4 0.31None
Adult carcass26 ± 34 of 4 2.90Up
Larval CNS1 ± 10 of 4 0.17None
Larval Salivary gland23 ± 34 of 4 2.62Up
Larval midgut8 ± 20 of 4 0.88None
Larval tubule3 ± 10 of 4 0.40None
Larval hindgut12 ± 14 of 4 1.34None
Larval fat body1 ± 00 of 4 0.20None
Larval trachea6 ± 02 of 4 0.74None
Larval carcass9 ± 12 of 4 1.04None
S2 cells (growing)1 ± 00 of 4 0.18None
Whole fly9 ± 22 of 4

Looking for FBgn0051809. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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