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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051810 through 18771 annotations produced 2 hits



(CG31810):

Annotation Number : CG31810
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051810
Gbrowse : chr2L:16849017-16852366 (-) // 100.0 // /// chr2L:16853619-16854840 (-) // 80.63 //
Probeset : 1630359_at
Accessions : protein= NP_724023;, nucleotide= NM_165198;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051810.
BDGP gene expression has embryonic in situ data for CG31810: 11 pix of staining in 6 body parts.
Homophila reports that CG31810 is a close match (1e-38) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).
TRiP has 1 RNAi stocks for FBgn0051810 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051810 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head25 ± 44 of 4 0.60Down
Eye5 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion10 ± 21 of 4 0.20Down
Salivary gland9 ± 30 of 4 0.22Down
Crop3945 ± 1514 of 490.90Up
Midgut291 ± 154 of 4 6.70Up
Tubule6 ± 10 of 4 0.20Down
Hindgut699 ± 194 of 416.10Up
Heart49 ± 84 of 4 1.15None
Fat body65 ± 24 of 4 1.50Up
Ovary3 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 20 of 4 0.15Down
Mated spermatheca7 ± 20 of 4 0.17Down
Adult carcass52 ± 74 of 4 1.20None
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland1691 ± 1104 of 438.98Up
Larval midgut131 ± 94 of 4 3.03Up
Larval tubule5 ± 11 of 4 0.10Down
Larval hindgut58 ± 54 of 4 1.35None
Larval fat body8 ± 20 of 4 0.20Down
Larval trachea3 ± 30 of 4 0.07Down
Larval carcass128 ± 424 of 4 2.96None
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly43 ± 44 of 4



/// (CG31809 /// CG31810):

Annotation Number : CG31809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051809 /// FBgn0051810
Gbrowse : chr2L:16853745-16854902 (-) // 100.0 // /// chr2L:16849144-16850280 (-) // 96.72 //
Probeset : 1630244_s_at
Accessions : protein= NP_001097168; /// NP_724023;, nucleotide= NM_001103698; /// NM_165198;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051809 /// FBgn0051810.
Homophila reports that CG31809 is a close match (7e-21) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head32 ± 44 of 4 1.10None
Eye12 ± 42 of 4 0.42Down
Thoracicoabdominal ganglion16 ± 14 of 4 0.60Down
Salivary gland2 ± 00 of 4 0.10Down
Crop3046 ± 1194 of 4106.20Up
Midgut186 ± 154 of 4 6.50Up
Tubule6 ± 00 of 4 0.20Down
Hindgut458 ± 54 of 416.00Up
Heart25 ± 34 of 4 0.88None
Fat body37 ± 54 of 4 1.30None
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.16Down
Mated spermatheca7 ± 20 of 4 0.25Down
Adult carcass36 ± 24 of 4 1.30None
Larval CNS3 ± 31 of 4 0.13Down
Larval Salivary gland1060 ± 754 of 437.00Up
Larval midgut42 ± 44 of 4 1.49Up
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut22 ± 14 of 4 0.79None
Larval fat body5 ± 10 of 4 0.20Down
Larval trachea2 ± 20 of 4 0.09Down
Larval carcass67 ± 194 of 4 2.36None
S2 cells (growing)2 ± 10 of 4 0.10Down
Whole fly28 ± 24 of 4

Looking for FBgn0051810. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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