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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051816 through 18771 annotations produced 1 hits


Annotation Number : CG31816
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051816
Gbrowse : chr2L:16542555-16543265 (+) // 100.0 //
Probeset : 1641263_at
Accessions : protein= NP_723977;, nucleotide= NM_165166;
FlyMine data for FBgn0051816.
VDRC has 2 RNAi stocks for FBgn0051816 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head4 20 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion1 10 of 4 0.00Down
Salivary gland4 10 of 4 0.04Down
Crop2 00 of 4 0.00Down
Midgut3 20 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body2 20 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis1198 234 of 410.10Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca3 10 of 4 0.03Down
Adult carcass3 10 of 4 0.00Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut1 00 of 4 0.02Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut2 00 of 4 0.02Down
Larval fat body70 293 of 4 0.60None
Larval trachea7 61 of 4 0.06Down
Larval carcass4 00 of 4 0.04Down
S2 cells (growing)4 00 of 4 0.04Down
Whole fly118 114 of 4

Looking for FBgn0051816. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime