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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051820 through 18771 annotations produced 1 hits



(CG31820):

Annotation Number : CG31820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051820
Gbrowse : chr2L:16005767-16006279 (-) // 100.0 //
Probeset : 1633574_at
Accessions : protein= NP_723947;, nucleotide= NM_165143;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051820.
BDGP gene expression has embryonic in situ data for CG31820: 6 pix of staining in 1 body parts.
BioGrid reports that CG31820 interacts with CG7176 CG8568 CG9908 .
VDRC has 4 RNAi stocks for FBgn0051820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 0.00Down
Head6 11 of 4 0.00Down
Eye3 10 of 4 0.00Down
Thoracicoabdominal ganglion14 24 of 4 0.00Down
Salivary gland19 31 of 4 0.02Down
Crop12 23 of 4 0.00Down
Midgut11 12 of 4 0.00Down
Tubule9 21 of 4 0.00Down
Hindgut8 01 of 4 0.00Down
Heart6 00 of 4 0.01Down
Fat body12 73 of 4 0.01Down
Ovary4 11 of 4 0.00Down
Testis3267 1294 of 4 3.70Up
Male accessory glands16 32 of 4 0.00Down
Virgin spermatheca20 13 of 4 0.02Down
Mated spermatheca24 34 of 4 0.03Down
Adult carcass40 103 of 4 0.00Down
Larval CNS8 13 of 4 0.01Down
Larval Salivary gland10 22 of 4 0.01Down
Larval midgut17 42 of 4 0.02Down
Larval tubule7 10 of 4 0.00Down
Larval hindgut9 03 of 4 0.01Down
Larval fat body548 2554 of 4 0.60None
Larval trachea37 522 of 4 0.04Down
Larval carcass16 24 of 4 0.02Down
S2 cells (growing)9 03 of 4 0.01Down
Whole fly891 584 of 4

Looking for FBgn0051820. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime