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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051821 through 18771 annotations produced 1 hits


Annotation Number : CG31821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051821
Gbrowse : chr2L:15901040-15902377 (-) // 100.0 //
Probeset : 1629542_at
Accessions : protein= NP_609771;, nucleotide= NM_135927;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase
FlyMine data for FBgn0051821.
Homophila reports that CG31821 is a close match (4e-15) to human gene CTSA;GLB2;GSL;NGBE;PPGB (NP_000299), a gene associated with Galactosialidosis (3).
VDRC has 2 RNAi stocks for FBgn0051821 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.08Down
Thoracicoabdominal ganglion2 20 of 4 0.10Down
Salivary gland10 50 of 4 0.39Down
Crop1316 694 of 448.00Up
Midgut317 104 of 411.60Up
Tubule60 74 of 4 2.20Up
Hindgut194 74 of 4 7.10Up
Heart22 64 of 4 0.83None
Fat body5 30 of 4 0.19Down
Ovary4 10 of 4 0.10Down
Testis1 00 of 4 0.00Down
Male accessory glands19 51 of 4 0.70None
Virgin spermatheca0 00 of 4 0.03Down
Mated spermatheca3 20 of 4 0.14Down
Adult carcass1 00 of 4 0.10Down
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut260 224 of 4 9.51Up
Larval tubule53 24 of 4 1.90Up
Larval hindgut331 254 of 412.08Up
Larval fat body14 33 of 4 0.50Down
Larval trachea5 81 of 4 0.19Down
Larval carcass15 20 of 4 0.56Down
S2 cells (growing)2 00 of 4 0.08Down
Whole fly27 24 of 4

Looking for FBgn0051821. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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