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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051849 through 18771 annotations produced 1 hits



(CG31849):

Annotation Number : CG31849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051849
Gbrowse : chr2L:13180396-13182593 (-) // 100.0 //
Probeset : 1638371_at
Accessions : protein= NP_723787;, nucleotide= NM_165027;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0003830 // beta-1
FlyMine data for FBgn0051849.
BDGP gene expression has embryonic in situ data for CG31849: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0051849 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 34 of 4 2.40Up
Head34 ± 14 of 4 0.70Down
Eye12 ± 03 of 4 0.27Down
Thoracicoabdominal ganglion133 ± 34 of 4 2.80Up
Salivary gland19 ± 20 of 4 0.42Down
Crop66 ± 34 of 4 1.40Up
Midgut16 ± 10 of 4 0.30Down
Tubule11 ± 00 of 4 0.20Down
Hindgut29 ± 24 of 4 0.60Down
Heart51 ± 24 of 4 1.10None
Fat body20 ± 41 of 4 0.43Down
Ovary104 ± 24 of 4 2.20Up
Testis24 ± 24 of 4 0.50Down
Male accessory glands22 ± 02 of 4 0.50Down
Virgin spermatheca18 ± 10 of 4 0.38Down
Mated spermatheca15 ± 10 of 4 0.33Down
Adult carcass17 ± 20 of 4 0.40Down
Larval CNS57 ± 44 of 4 1.23Up
Larval Salivary gland13 ± 20 of 4 0.29Down
Larval midgut19 ± 50 of 4 0.42Down
Larval tubule18 ± 20 of 4 0.40Down
Larval hindgut40 ± 24 of 4 0.86None
Larval fat body20 ± 33 of 4 0.40Down
Larval trachea35 ± 64 of 4 0.75None
Larval carcass42 ± 24 of 4 0.90None
S2 cells (growing)32 ± 04 of 4 0.68Down
Whole fly47 ± 34 of 4

Looking for FBgn0051849. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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