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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051860 through 18771 annotations produced 1 hits



(CG31860):

Annotation Number : CG31860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051860
Gbrowse : chr2L:12164414-12166631 (+) // 100.0 //
Probeset : 1628612_at
Accessions : protein= NP_723732;, nucleotide= NM_164998;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005385 // zinc ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0008324 //
FlyMine data for FBgn0051860.
Homophila reports that CG31860 is a close match (3e-55) to human gene SLC30A8;ZNT8 (NP_776250), a gene associated with {Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3).
TRiP has 1 RNAi stocks for FBgn0051860 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.30Down
Head7 ± 30 of 4 0.40Down
Eye2 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion10 ± 00 of 4 0.50Down
Salivary gland10 ± 30 of 4 0.56None
Crop6 ± 20 of 4 0.40Down
Midgut9 ± 20 of 4 0.50Down
Tubule3 ± 00 of 4 0.20Down
Hindgut9 ± 20 of 4 0.50Down
Heart1 ± 00 of 4 0.09Down
Fat body9 ± 50 of 4 0.52Down
Ovary3 ± 10 of 4 0.20Down
Testis147 ± 24 of 4 7.80Up
Male accessory glands17 ± 21 of 4 0.90None
Virgin spermatheca4 ± 00 of 4 0.26Down
Mated spermatheca5 ± 00 of 4 0.29Down
Adult carcass10 ± 30 of 4 0.50None
Larval CNS1 ± 00 of 4 0.08Down
Larval Salivary gland5 ± 20 of 4 0.28Down
Larval midgut8 ± 00 of 4 0.45Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut6 ± 10 of 4 0.33Down
Larval fat body38 ± 122 of 4 2.10None
Larval trachea6 ± 12 of 4 0.32Down
Larval carcass7 ± 20 of 4 0.39Down
S2 cells (growing)4 ± 00 of 4 0.23Down
Whole fly18 ± 13 of 4

Looking for FBgn0051860. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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