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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051867 through 18771 annotations produced 1 hits


(CG31867):

Annotation Number : CG31867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051867
Gbrowse : chr2L:11144578-11145417 (-) // 100.0 //
Probeset : 1632495_at
Accessions : protein= NP_723660;, nucleotide= NM_164958;
FlyMine data for FBgn0051867.
BDGP gene expression has embryonic in situ data for CG31867: 8 pix of staining in 1 body parts.
VDRC has 7 RNAi stocks for FBgn0051867 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye4 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland9 ± 50 of 4 0.24Down
Crop4 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart1 ± 10 of 4 0.04Down
Fat body2 ± 20 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis461 ± 304 of 411.20Up
Male accessory glands8 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.09Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.11Down
Larval midgut5 ± 20 of 4 0.14Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut2 ± 11 of 4 0.07Down
Larval fat body35 ± 142 of 4 0.80None
Larval trachea5 ± 30 of 4 0.13Down
Larval carcass5 ± 20 of 4 0.12Down
S2 cells (growing)2 ± 00 of 4 0.05Down
Whole fly41 ± 24 of 4

Looking for FBgn0051867. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime