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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051869 through 18771 annotations produced 1 hits



(CG31869):

Annotation Number : CG31869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051869
Gbrowse : chr2L:10773034-10801085 (-) // 100.0 //
Probeset : 1640279_at
Accessions : protein= NP_001137814; /// NP_001137815; /// NP_723619;, nucleotide= NM_001144342; /// NM_001144343; /// NM_164944;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051869.
BDGP gene expression has embryonic in situ data for CG31869: 4 pix of staining in 1 body parts.
BioGrid reports that CG31869 interacts with CG4328 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 30 of 4 1.70None
Head9 ± 30 of 4 1.70None
Eye14 ± 40 of 4 2.74None
Thoracicoabdominal ganglion32 ± 40 of 4 6.30Up
Salivary gland6 ± 20 of 4 1.26None
Crop2 ± 00 of 4 0.50None
Midgut1 ± 00 of 4 0.20None
Tubule0 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.20None
Heart0 ± 00 of 4 0.14None
Fat body1 ± 00 of 4 0.26None
Ovary4 ± 20 of 4 0.90None
Testis1 ± 00 of 4 0.20None
Male accessory glands1 ± 00 of 4 0.20None
Virgin spermatheca1 ± 00 of 4 0.27None
Mated spermatheca1 ± 00 of 4 0.26None
Adult carcass2 ± 00 of 4 0.40None
Larval CNS5 ± 30 of 4 1.00None
Larval Salivary gland1 ± 00 of 4 0.21None
Larval midgut1 ± 00 of 4 0.27None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.24None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea15 ± 100 of 4 3.03None
Larval carcass1 ± 00 of 4 0.33None
S2 cells (growing)0 ± 00 of 4 0.15None
Whole fly5 ± 40 of 4

Looking for FBgn0051869. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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