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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051872 through 18771 annotations produced 2 hits



/// CG31872 (CG31872 /// DsimGD23718):

Annotation Number : CG31872
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051872
Gbrowse : chr2L:10639945-10643492 (+) // 100.0 //
Probeset : 1636087_at
Accessions : protein= NP_723603;, nucleotide= NM_164937;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0051872.
BDGP gene expression has embryonic in situ data for CG31872: 12 pix of staining in 3 body parts.
Homophila reports that CG31872 is a close match (1e-47) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
BioGrid reports that CG31872 interacts with CG5057 CG6899 CG8292 .
VDRC has 3 RNAi stocks for FBgn0051872 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland6 10 of 4 0.04None
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body2 20 of 4 0.02None
Ovary1 00 of 4 0.00Down
Testis14 72 of 4 0.10None
Male accessory glands5418 3704 of 432.30Up
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass14 20 of 4 0.10None
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 10 of 4 0.01Down
Larval midgut2 00 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.02None
Larval fat body1 00 of 4 0.00Down
Larval trachea1 11 of 4 0.01Down
Larval carcass0 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly167 514 of 4



/// /// CG31872 (CG18284 /// CG31872 /// DsimGD23718):

Annotation Number : CG18284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043825 /// FBgn0051872
Gbrowse : chr2L:10643982-10645815 (+) // 100.0 // /// chr2L:10641743-10643353 (+) // 75.74 //
Probeset : 1636459_s_at
Accessions : protein= NP_609428; /// NP_723603;, nucleotide= NM_135584; /// NM_164937;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0043825 /// FBgn0051872.
Homophila reports that CG18284 is a close match (2e-46) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
BioGrid reports that CG18284 interacts with CG5057 CG6899 CG8292 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 0.00Down
Head10 03 of 4 0.00Down
Eye6 00 of 4 0.01Down
Thoracicoabdominal ganglion8 12 of 4 0.00Down
Salivary gland17 41 of 4 0.01Down
Crop7 01 of 4 0.00Down
Midgut9 10 of 4 0.00Down
Tubule11 00 of 4 0.00Down
Hindgut6 01 of 4 0.00Down
Heart4 12 of 4 0.00Down
Fat body14 53 of 4 0.01Down
Ovary17 83 of 4 0.00Down
Testis120 564 of 4 0.10Down
Male accessory glands12811 4564 of 4 9.80Up
Virgin spermatheca7 10 of 4 0.01Down
Mated spermatheca11 21 of 4 0.01Down
Adult carcass162 573 of 4 0.10Down
Larval CNS6 13 of 4 0.01Down
Larval Salivary gland11 11 of 4 0.01Down
Larval midgut12 31 of 4 0.01Down
Larval tubule9 11 of 4 0.00Down
Larval hindgut5 10 of 4 0.00Down
Larval fat body11 21 of 4 0.00Down
Larval trachea8 41 of 4 0.01Down
Larval carcass6 10 of 4 0.01Down
S2 cells (growing)6 10 of 4 0.00Down
Whole fly1301 1294 of 4

Looking for FBgn0051872. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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