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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051882 through 18771 annotations produced 1 hits


Annotation Number : CG31882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051882
Gbrowse : chr2L:9624582-9625285 (-) // 100.0 //
Probeset : 1631757_at
Accessions : protein= NP_723477;, nucleotide= NM_164865;
FlyMine data for FBgn0051882.
VDRC has 3 RNAi stocks for FBgn0051882 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland7 30 of 4 0.08Down
Crop1 00 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart3 00 of 4 0.04Down
Fat body6 20 of 4 0.07Down
Ovary1 00 of 4 0.00Down
Testis945 244 of 410.60Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca5 00 of 4 0.06Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass4 10 of 4 0.10Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland5 21 of 4 0.06Down
Larval midgut6 10 of 4 0.07Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut2 10 of 4 0.03Down
Larval fat body113 614 of 4 1.30None
Larval trachea6 91 of 4 0.07Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)2 10 of 4 0.03Down
Whole fly89 84 of 4

Looking for FBgn0051882. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime