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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051909 through 18771 annotations produced 1 hits



(CG31909):

Annotation Number : CG31909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051909
Gbrowse : chr2L:7257570-7258115 (+) // 100.0 // /// chr2L:7232226-7232767 (-) // 97.91 //
Probeset : 1638603_at
Accessions : protein= NP_001162900; /// NP_723266;, nucleotide= NM_001169429; /// NM_164745;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051909.
BioGrid reports that CG31909 interacts with CG7264 .
VDRC has 1 RNAi stocks for FBgn0051909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye6 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion5 ± 12 of 4 0.00Down
Salivary gland15 ± 51 of 4 0.08Down
Crop3 ± 11 of 4 0.00Down
Midgut4 ± 00 of 4 0.00Down
Tubule7 ± 01 of 4 0.00Down
Hindgut4 ± 11 of 4 0.00Down
Heart12 ± 30 of 4 0.06Down
Fat body15 ± 31 of 4 0.08Down
Ovary2 ± 02 of 4 0.00Down
Testis2456 ± 914 of 412.40Up
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca7 ± 00 of 4 0.04Down
Mated spermatheca10 ± 13 of 4 0.05Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS4 ± 12 of 4 0.02Down
Larval Salivary gland8 ± 12 of 4 0.04Down
Larval midgut5 ± 10 of 4 0.03Down
Larval tubule6 ± 11 of 4 0.00Down
Larval hindgut4 ± 01 of 4 0.02Down
Larval fat body521 ± 2564 of 4 2.60None
Larval trachea11 ± 122 of 4 0.06Down
Larval carcass5 ± 10 of 4 0.03Down
S2 cells (growing)4 ± 11 of 4 0.02Down
Whole fly198 ± 104 of 4

Looking for FBgn0051909. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime