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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051913 through 18771 annotations produced 1 hits



(CG31913):

Annotation Number : CG31913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051913
Gbrowse : chr2L:5784030-5784893 (+) // 100.0 //
Probeset : 1638781_at
Accessions : protein= NP_723119;, nucleotide= NM_164662;
FlyMine data for FBgn0051913.
VDRC has 2 RNAi stocks for FBgn0051913 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head6 10 of 4 0.10Down
Eye6 10 of 4 0.06Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland6 10 of 4 0.06Down
Crop4 10 of 4 0.00Down
Midgut3 00 of 4 0.00Down
Tubule6 10 of 4 0.10Down
Hindgut2 00 of 4 0.00Down
Heart2 00 of 4 0.03Down
Fat body3 10 of 4 0.04Down
Ovary1 00 of 4 0.00Down
Testis968 114 of 410.00Up
Male accessory glands7 30 of 4 0.10Down
Virgin spermatheca6 20 of 4 0.07Down
Mated spermatheca8 10 of 4 0.09Down
Adult carcass3 00 of 4 0.00Down
Larval CNS1 00 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.04Down
Larval midgut9 10 of 4 0.10Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut6 10 of 4 0.07Down
Larval fat body59 262 of 4 0.60None
Larval trachea7 51 of 4 0.08Down
Larval carcass2 00 of 4 0.02Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly96 44 of 4

Looking for FBgn0051913. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime