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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051915 through 18771 annotations produced 1 hits



(CG31915):

Annotation Number : CG31915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051915
Gbrowse : chr2L:5528086-5530668 (+) // 100.0 //
Probeset : 1627512_at
Accessions : protein= NP_723087;, nucleotide= NM_164645;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // in
Interpro : "0008475 // procollagen-lysine 5-dioxygenase activity // inferred from sequence or structural similarity /// 0016740 //
FlyMine data for FBgn0051915.
Homophila reports that CG31915 is a close match (6e-11) to human gene PLOD;PLOD1 (NP_000293), a gene associated with Ehlers-Danlos syndrome, type VI, 225400 (3);Nevo syndrome, 601451 (3).
VDRC has 3 RNAi stocks for FBgn0051915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 24 of 4 1.10None
Head99 ± 54 of 4 1.50Up
Eye58 ± 54 of 4 0.89None
Thoracicoabdominal ganglion69 ± 14 of 4 1.00None
Salivary gland36 ± 23 of 4 0.56Down
Crop47 ± 14 of 4 0.70None
Midgut32 ± 44 of 4 0.50Down
Tubule82 ± 54 of 4 1.20Up
Hindgut34 ± 24 of 4 0.50Down
Heart194 ± 34 of 4 2.95Up
Fat body253 ± 314 of 4 3.84Up
Ovary125 ± 34 of 4 1.90Up
Testis30 ± 14 of 4 0.50Down
Male accessory glands48 ± 34 of 4 0.70None
Virgin spermatheca137 ± 14 of 4 2.09Up
Mated spermatheca184 ± 124 of 4 2.79Up
Adult carcass102 ± 94 of 4 1.50Up
Larval CNS127 ± 44 of 4 1.93Up
Larval Salivary gland60 ± 34 of 4 0.92None
Larval midgut30 ± 24 of 4 0.46Down
Larval tubule134 ± 84 of 4 2.00Up
Larval hindgut57 ± 34 of 4 0.88None
Larval fat body450 ± 294 of 4 6.80Up
Larval trachea41 ± 64 of 4 0.64Down
Larval carcass45 ± 14 of 4 0.69None
S2 cells (growing)604 ± 164 of 4 9.15Up
Whole fly66 ± 74 of 4

Looking for FBgn0051915. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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