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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051921 through 18771 annotations produced 1 hits


Annotation Number : CG31921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051921
Gbrowse : chr2L:329990-332335 (-) // 100.0 //
Probeset : 1629289_at
Accessions : protein= NP_722627;, nucleotide= NM_164380;
FlyMine data for FBgn0051921.
VDRC has 2 RNAi stocks for FBgn0051921 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head2 10 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland15 50 of 4 0.17Down
Crop4 10 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart1 10 of 4 0.02Down
Fat body6 20 of 4 0.07Down
Ovary3 20 of 4 0.00Down
Testis1138 264 of 412.90Up
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.07Down
Mated spermatheca7 10 of 4 0.09Down
Adult carcass9 20 of 4 0.10Down
Larval CNS3 10 of 4 0.04Down
Larval Salivary gland5 20 of 4 0.06Down
Larval midgut1 00 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body93 513 of 4 1.10None
Larval trachea4 60 of 4 0.05Down
Larval carcass11 10 of 4 0.13Down
S2 cells (growing)3 10 of 4 0.04Down
Whole fly88 54 of 4

Looking for FBgn0051921. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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