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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051952 through 18771 annotations produced 1 hits


(CG31952):

Annotation Number : CG31952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051952
Gbrowse : chr2L:3416864-3417410 (+) // 100.0 //
Probeset : 1628401_at
Accessions : protein= NP_608775;, nucleotide= NM_134931;
FlyMine data for FBgn0051952.
VDRC has 2 RNAi stocks for FBgn0051952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.31Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.03Down
Fat body0 ± 00 of 4 0.03Down
Ovary1 ± 00 of 4 0.10Down
Testis381 ± 84 of 415.50Up
Male accessory glands8 ± 10 of 4 0.30Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.10Down
Larval Salivary gland2 ± 00 of 4 0.09Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body11 ± 81 of 4 0.50None
Larval trachea2 ± 30 of 4 0.10Down
Larval carcass2 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly24 ± 13 of 4

Looking for FBgn0051952. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime