FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0051955 through 18771 annotations produced 1 hits

(CG31955):

Annotation Number : CG31955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051955
Gbrowse : chr2L:3712155-3712862 (-) // 100.0 //
Probeset : 1633946_at
Accessions : protein= NP_722935;, nucleotide= NM_164552;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0051955.
TRiP has 1 RNAi stocks for FBgn0051955 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051955 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 0	0 of 4	0.50	Down
Head	64 ± 13	4 of 4	3.60	Up
Eye	25 ± 3	4 of 4	1.41	None
Thoracicoabdominal ganglion	9 ± 1	0 of 4	0.50	Down
Salivary gland	77 ± 12	4 of 4	4.34	Up
Crop	164 ± 11	4 of 4	9.20	Up
Midgut	24 ± 2	2 of 4	1.40	None
Tubule	13 ± 1	2 of 4	0.80	Down
Hindgut	25 ± 1	4 of 4	1.40	Up
Heart	152 ± 5	4 of 4	8.52	Up
Fat body	242 ± 26	4 of 4	13.51	Up
Ovary	13 ± 1	4 of 4	0.70	Down
Testis	9 ± 1	1 of 4	0.50	Down
Male accessory glands	16 ± 3	3 of 4	0.90	None
Virgin spermatheca	151 ± 11	4 of 4	8.44	Up
Mated spermatheca	131 ± 10	4 of 4	7.31	Up
Adult carcass	62 ± 8	4 of 4	3.50	Up
Larval CNS	11 ± 0	2 of 4	0.67	Down
Larval Salivary gland	227 ± 11	4 of 4	12.68	Up
Larval midgut	13 ± 1	0 of 4	0.76	None
Larval tubule	18 ± 4	1 of 4	1.00	None
Larval hindgut	16 ± 2	4 of 4	0.92	None
Larval fat body	206 ± 35	4 of 4	11.50	Up
Larval trachea	57 ± 7	4 of 4	3.22	Up
Larval carcass	30 ± 2	4 of 4	1.72	Up
S2 cells (growing)	302 ± 7	4 of 4	16.89	Up
Whole fly	17 ± 1	4 of 4

Looking for FBgn0051955. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720