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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051957 through 18771 annotations produced 1 hits



(CG31957):

Annotation Number : CG31957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051957
Gbrowse : chr2L:3871512-3872386 (-) // 100.0 //
Probeset : 1641624_at
Accessions : protein= NP_722949;, nucleotide= NM_164564;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // i
FlyMine data for FBgn0051957.
BioGrid reports that CG31957 interacts with CG8933 .
VDRC has 2 RNAi stocks for FBgn0051957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 24 of 4 0.40Down
Head71 ± 34 of 4 0.50Down
Eye89 ± 44 of 4 0.61Down
Thoracicoabdominal ganglion64 ± 24 of 4 0.40Down
Salivary gland84 ± 34 of 4 0.58Down
Crop85 ± 44 of 4 0.60Down
Midgut75 ± 34 of 4 0.50Down
Tubule46 ± 44 of 4 0.30Down
Hindgut56 ± 14 of 4 0.40Down
Heart67 ± 64 of 4 0.46Down
Fat body50 ± 84 of 4 0.35Down
Ovary346 ± 64 of 4 2.40Up
Testis198 ± 74 of 4 1.40Up
Male accessory glands82 ± 24 of 4 0.60Down
Virgin spermatheca77 ± 64 of 4 0.53Down
Mated spermatheca88 ± 24 of 4 0.61Down
Adult carcass64 ± 44 of 4 0.40Down
Larval CNS98 ± 114 of 4 0.67Down
Larval Salivary gland113 ± 74 of 4 0.78Down
Larval midgut39 ± 44 of 4 0.27Down
Larval tubule85 ± 44 of 4 0.60Down
Larval hindgut42 ± 64 of 4 0.29Down
Larval fat body105 ± 94 of 4 0.70Down
Larval trachea107 ± 114 of 4 0.74Down
Larval carcass56 ± 24 of 4 0.39Down
S2 cells (growing)50 ± 24 of 4 0.35Down
Whole fly145 ± 34 of 4

Looking for FBgn0051957. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime