Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051958 through 18771 annotations produced 1 hits



/// (CG31958 /// CG31960):

Annotation Number : CG31960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051958 /// FBgn0051960
Gbrowse : chr2L:3784945-3785515 (+) // 100.0 //
Probeset : 1636589_s_at
Accessions : protein= NP_722942; /// NP_722943;, nucleotide= NM_164559; /// NM_164560;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0051958 /// FBgn0051960.
Homophila reports that CG31960 is a close match (7e-15) to human gene CABP4;CSNB2B (NP_660201), a gene associated with Night blindness, congenital stationary, type 2B, 610427 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland9 ± 10 of 4 0.39Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 10 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body6 ± 43 of 4 0.27Down
Ovary1 ± 00 of 4 0.10Down
Testis388 ± 74 of 416.40Up
Male accessory glands7 ± 10 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.14Down
Mated spermatheca3 ± 11 of 4 0.14Down
Adult carcass5 ± 31 of 4 0.20Down
Larval CNS3 ± 11 of 4 0.15Down
Larval Salivary gland2 ± 00 of 4 0.09Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.07Down
Larval fat body66 ± 333 of 4 2.80None
Larval trachea13 ± 24 of 4 0.57Down
Larval carcass0 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly23 ± 14 of 4

Looking for FBgn0051958. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime