FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0051961 through 18771 annotations produced 1 hits

(CG31961):

Annotation Number : CG31961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051961
Gbrowse : chr2L:4186249-4187789 (-) // 99.63 //
Probeset : 1638752_s_at
Accessions : protein= NP_722959; /// NP_722960;, nucleotide= NM_164570; /// NM_164571;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0051961.
BDGP gene expression has embryonic in situ data for CG31961: 4 pix of staining in 1 body parts.
Homophila reports that CG31961 is a close match (4e-16) to human gene RP2 (NP_008846), a gene associated with Retinitis pigmentosa-2 (3);Xp11.3 deletion syndrome, 300578 (3).
BioGrid reports that CG31961 interacts with CG8851 .
VDRC has 2 RNAi stocks for FBgn0051961 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	131 ± 3	4 of 4	1.60	Up
Head	62 ± 3	4 of 4	0.80	Down
Eye	69 ± 6	4 of 4	0.85	None
Thoracicoabdominal ganglion	108 ± 3	4 of 4	1.30	Up
Salivary gland	84 ± 4	4 of 4	1.02	None
Crop	79 ± 5	4 of 4	1.00	None
Midgut	44 ± 0	4 of 4	0.50	Down
Tubule	49 ± 1	4 of 4	0.60	Down
Hindgut	62 ± 2	4 of 4	0.80	Down
Heart	32 ± 2	4 of 4	0.39	Down
Fat body	25 ± 3	4 of 4	0.31	Down
Ovary	139 ± 4	4 of 4	1.70	Up
Testis	33 ± 2	4 of 4	0.40	Down
Male accessory glands	39 ± 2	4 of 4	0.50	Down
Virgin spermatheca	33 ± 3	4 of 4	0.40	Down
Mated spermatheca	35 ± 1	4 of 4	0.42	Down
Adult carcass	49 ± 3	4 of 4	0.60	Down
Larval CNS	75 ± 2	4 of 4	0.91	None
Larval Salivary gland	54 ± 3	4 of 4	0.66	Down
Larval midgut	27 ± 1	4 of 4	0.34	Down
Larval tubule	77 ± 2	4 of 4	0.90	None
Larval hindgut	55 ± 1	4 of 4	0.68	Down
Larval fat body	55 ± 6	4 of 4	0.70	Down
Larval trachea	49 ± 6	4 of 4	0.60	Down
Larval carcass	44 ± 3	4 of 4	0.53	Down
S2 cells (growing)	72 ± 3	4 of 4	0.88	None
Whole fly	82 ± 5	4 of 4

Looking for FBgn0051961. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720