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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0051988 through 18771 annotations produced 2 hits


(CG31988):

Annotation Number : CG31988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051988
Gbrowse : chr2L:21201528-21202742 (-) // 100.0 //
Probeset : 1624855_at
Accessions : protein= NP_610098;, nucleotide= NM_136254;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0051988.
BDGP gene expression has embryonic in situ data for CG31988: 8 pix of staining in 1 body parts.
Homophila reports that CG31988 is a close match (3e-12) to human gene LMX1B;NPS1 (NP_002307), a gene associated with Nail-patella syndrome with open-angle glaucoma, 137750 (3);Nail-patella syndrome, 161200 (3).
VDRC has 3 RNAi stocks for FBgn0051988 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head5 ± 22 of 4 0.00Down
Eye4 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.01Down
Crop8 ± 10 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule7 ± 20 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.00Down
Fat body13 ± 73 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis3140 ± 1294 of 4 3.60Up
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.01Down
Mated spermatheca16 ± 32 of 4 0.02Down
Adult carcass17 ± 52 of 4 0.00Down
Larval CNS10 ± 34 of 4 0.01Down
Larval Salivary gland10 ± 22 of 4 0.01Down
Larval midgut6 ± 20 of 4 0.01Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut4 ± 11 of 4 0.01Down
Larval fat body694 ± 3214 of 4 0.80None
Larval trachea31 ± 522 of 4 0.04Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly876 ± 704 of 4


/// /// CG31624 (CG31624 /// CG31988 /// DsimGD21644):

Annotation Number : CG31624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051624 /// FBgn0051988
Gbrowse : chr2L:21199306-21200263 (-) // 100.0 // /// chr2L:21201608-21202466 (-) // 92.93 //
Probeset : 1624460_s_at
Accessions : protein= NP_001163031; /// NP_610098; /// NP_724318;, nucleotide= NM_001169560; /// NM_136254; /// NM_165361;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0051624 /// FBgn0051988.
Homophila reports that CG31624 is a close match (4e-12) to human gene LMX1B;NPS1 (NP_002307), a gene associated with Nail-patella syndrome with open-angle glaucoma, 137750 (3);Nail-patella syndrome, 161200 (3).
BioGrid reports that CG31624 interacts with CG6163 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 20 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.00Down
Crop8 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body8 ± 70 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis3197 ± 1414 of 4 4.40Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca8 ± 10 of 4 0.01Down
Adult carcass27 ± 70 of 4 0.00Down
Larval CNS7 ± 30 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut7 ± 20 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.01Down
Larval fat body700 ± 3584 of 4 1.00None
Larval trachea26 ± 421 of 4 0.04Down
Larval carcass6 ± 20 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly727 ± 564 of 4

Looking for FBgn0051988. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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