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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051989 through 18771 annotations produced 1 hits



Chromosome associated protein D3 (Cap-D3):

Annotation Number : CG31989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051989
Gbrowse : chr2L:5525904-5537110 (+) // 100.0 //
Probeset : 1624868_at
Accessions : protein= NP_001162887; /// NP_001162888; /// NP_608935;, nucleotide= NM_001169416; /// NM_001169417; /// NM_135091;
Pathway : 0000796 // condensin complex // inferred from sequence or structural similarity /// 0000796 // condensin complex // non-
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0051989.
BDGP gene expression has embryonic in situ data for CG31989: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0051989 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051989 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 04 of 4 2.20Up
Head6 23 of 4 1.60None
Eye6 01 of 4 1.54None
Thoracicoabdominal ganglion9 14 of 4 2.30Up
Salivary gland7 30 of 4 1.70None
Crop3 10 of 4 0.90None
Midgut2 10 of 4 0.70None
Tubule2 00 of 4 0.50Down
Hindgut3 01 of 4 0.80None
Heart2 10 of 4 0.68None
Fat body5 01 of 4 1.18None
Ovary2 00 of 4 0.50None
Testis7 12 of 4 1.70None
Male accessory glands5 11 of 4 1.20None
Virgin spermatheca5 00 of 4 1.34None
Mated spermatheca4 01 of 4 1.07None
Adult carcass4 10 of 4 1.10None
Larval CNS7 04 of 4 1.71Up
Larval Salivary gland2 10 of 4 0.68None
Larval midgut3 10 of 4 0.89None
Larval tubule1 00 of 4 0.40None
Larval hindgut0 00 of 4 0.10Down
Larval fat body8 01 of 4 2.10Up
Larval trachea2 10 of 4 0.48None
Larval carcass3 10 of 4 0.76None
S2 cells (growing)3 02 of 4 0.95None
Whole fly4 01 of 4

Looking for FBgn0051989. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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