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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0051997 through 18771 annotations produced 1 hits



(CG31997):

Annotation Number : CG31997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051997
Gbrowse : chr4:175334-176678 (-) // 100.0 //
Probeset : 1633712_at
Accessions : protein= NP_726539;, nucleotide= NM_166735;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051997.
VDRC has 3 RNAi stocks for FBgn0051997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain290 ± 64 of 4 1.20Up
Head1407 ± 474 of 4 6.00Up
Eye2126 ± 364 of 4 9.13Up
Thoracicoabdominal ganglion449 ± 184 of 4 1.90Up
Salivary gland3801 ± 654 of 416.31Up
Crop1895 ± 224 of 4 8.10Up
Midgut106 ± 44 of 4 0.50Down
Tubule54 ± 114 of 4 0.20Down
Hindgut2844 ± 924 of 412.20Up
Heart80 ± 104 of 4 0.34Down
Fat body60 ± 104 of 4 0.26Down
Ovary12 ± 14 of 4 0.10Down
Testis63 ± 64 of 4 0.30Down
Male accessory glands96 ± 124 of 4 0.40Down
Virgin spermatheca820 ± 294 of 4 3.52Up
Mated spermatheca953 ± 1064 of 4 4.09Up
Adult carcass782 ± 524 of 4 3.40Up
Larval CNS53 ± 64 of 4 0.23Down
Larval Salivary gland221 ± 314 of 4 0.95None
Larval midgut87 ± 64 of 4 0.38Down
Larval tubule492 ± 454 of 4 2.10Up
Larval hindgut1704 ± 754 of 4 7.31Up
Larval fat body8 ± 51 of 4 0.00Down
Larval trachea4195 ± 2504 of 418.00Up
Larval carcass2742 ± 1484 of 411.77Up
S2 cells (growing)66 ± 24 of 4 0.28Down
Whole fly233 ± 64 of 4

Looking for FBgn0051997. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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