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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052000 through 18771 annotations produced 2 hits



(CG32000):

Annotation Number : CG32000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052000
Gbrowse : chr4:156897-163749 (+) // 100.0 //
Probeset : 1630078_a_at
Accessions : protein= NP_001096849; /// NP_726532; /// NP_726533; /// NP_726534; /// NP_726535; /// NP_726536; /// NP_726537; /// NP_995587;, nucleotide= NM_001103379; /// NM_166728; /// NM_166729; /// NM_166730; /// NM_166731; /// NM_166732; /// NM_166733; /// NM_205865;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0052000.
BDGP gene expression has embryonic in situ data for CG32000: 4 pix of staining in 1 body parts.
Homophila reports that CG32000 is a close match (9e-11) to human gene ATP2A2;ATP2B;DAR (NP_733765), a gene associated with Acrokeratosis verruciformis, 101900 (3);Darier disease, 124200 (3).
TRiP has 1 RNAi stocks for FBgn0052000 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1318 ± 244 of 4 4.00Up
Head542 ± 314 of 4 1.70Up
Eye603 ± 314 of 4 1.84Up
Thoracicoabdominal ganglion1377 ± 264 of 4 4.20Up
Salivary gland502 ± 164 of 4 1.53Up
Crop554 ± 154 of 4 1.70Up
Midgut460 ± 14 of 4 1.40Up
Tubule974 ± 774 of 4 3.00Up
Hindgut485 ± 94 of 4 1.50Up
Heart474 ± 164 of 4 1.44Up
Fat body339 ± 164 of 4 1.03None
Ovary515 ± 74 of 4 1.60Up
Testis80 ± 54 of 4 0.20Down
Male accessory glands289 ± 164 of 4 0.90None
Virgin spermatheca447 ± 464 of 4 1.36None
Mated spermatheca484 ± 304 of 4 1.48Up
Adult carcass340 ± 114 of 4 1.00None
Larval CNS794 ± 334 of 4 2.42Up
Larval Salivary gland629 ± 144 of 4 1.92Up
Larval midgut571 ± 234 of 4 1.74Up
Larval tubule812 ± 324 of 4 2.50Up
Larval hindgut688 ± 224 of 4 2.09Up
Larval fat body278 ± 194 of 4 0.80None
Larval trachea472 ± 204 of 4 1.44Up
Larval carcass672 ± 324 of 4 2.05Up
S2 cells (growing)590 ± 204 of 4 1.80Up
Whole fly328 ± 224 of 4



(CG32000):

Annotation Number : CG32000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052000
Gbrowse : chr4:152849-160709 (+) // 100.0 //
Probeset : 1625955_a_at
Accessions : protein= NP_001096849; /// NP_726532; /// NP_726533; /// NP_726534; /// NP_726535; /// NP_726536; /// NP_726537; /// NP_995587;, nucleotide= NM_001103379; /// NM_166728; /// NM_166729; /// NM_166730; /// NM_166731; /// NM_166732; /// NM_166733; /// NM_205865;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0052000.
BDGP gene expression has embryonic in situ data for CG32000: 4 pix of staining in 1 body parts.
Homophila reports that CG32000 is a close match (9e-11) to human gene ATP2A2;ATP2B;DAR (NP_733765), a gene associated with Acrokeratosis verruciformis, 101900 (3);Darier disease, 124200 (3).
TRiP has 1 RNAi stocks for FBgn0052000 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 ± 44 of 4 2.80Up
Head68 ± 124 of 4 1.40None
Eye33 ± 64 of 4 0.71None
Thoracicoabdominal ganglion83 ± 244 of 4 1.80None
Salivary gland34 ± 43 of 4 0.72None
Crop70 ± 64 of 4 1.50Up
Midgut59 ± 34 of 4 1.20None
Tubule64 ± 24 of 4 1.40Up
Hindgut53 ± 54 of 4 1.10None
Heart24 ± 44 of 4 0.52Down
Fat body41 ± 144 of 4 0.86None
Ovary66 ± 54 of 4 1.40Up
Testis4 ± 13 of 4 0.10Down
Male accessory glands22 ± 13 of 4 0.50Down
Virgin spermatheca17 ± 34 of 4 0.37Down
Mated spermatheca21 ± 14 of 4 0.45Down
Adult carcass40 ± 34 of 4 0.80None
Larval CNS55 ± 54 of 4 1.17None
Larval Salivary gland33 ± 24 of 4 0.70Down
Larval midgut47 ± 24 of 4 1.01None
Larval tubule155 ± 94 of 4 3.30Up
Larval hindgut56 ± 44 of 4 1.19None
Larval fat body76 ± 84 of 4 1.60Up
Larval trachea26 ± 64 of 4 0.56Down
Larval carcass32 ± 74 of 4 0.68None
S2 cells (growing)173 ± 74 of 4 3.63Up
Whole fly47 ± 44 of 4

Looking for FBgn0052000. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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