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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052006 through 18771 annotations produced 1 hits



/// (CG32006 /// DsecGM23241):

Annotation Number : CG32006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052006
Gbrowse : chr4:171392-174175 (+) // 100.0 //
Probeset : 1625727_at
Accessions : protein= NP_726538;, nucleotide= NM_166734;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0052006.
BDGP gene expression has embryonic in situ data for CG32006: 4 pix of staining in 1 body parts.
Homophila reports that CG32006 is a close match (5e-11) to human gene FKHL7;FOXC1;FREAC3 (NP_001444), a gene associated with Anterior segment mesenchymal dysgenesis (3);Axenfeld anomaly (3);Iridogoniodysgenesis, 601631 (3);Iris hypoplasia and glaucoma (3);Rieger anomaly (3).
VDRC has 2 RNAi stocks for FBgn0052006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.30None
Head44 ± 44 of 4 3.10Up
Eye14 ± 24 of 4 1.01None
Thoracicoabdominal ganglion11 ± 13 of 4 0.80None
Salivary gland16 ± 42 of 4 1.17None
Crop7 ± 21 of 4 0.50None
Midgut1 ± 00 of 4 0.10None
Tubule5 ± 01 of 4 0.40Down
Hindgut6 ± 10 of 4 0.50None
Heart3 ± 11 of 4 0.26None
Fat body11 ± 43 of 4 0.77None
Ovary0 ± 00 of 4 0.10None
Testis106 ± 94 of 4 7.40Up
Male accessory glands5 ± 20 of 4 0.40None
Virgin spermatheca5 ± 12 of 4 0.40None
Mated spermatheca9 ± 14 of 4 0.69None
Adult carcass22 ± 14 of 4 1.50None
Larval CNS4 ± 02 of 4 0.30None
Larval Salivary gland4 ± 10 of 4 0.34None
Larval midgut1 ± 10 of 4 0.13None
Larval tubule5 ± 11 of 4 0.30None
Larval hindgut3 ± 12 of 4 0.21None
Larval fat body25 ± 132 of 4 1.80None
Larval trachea5 ± 30 of 4 0.40None
Larval carcass1 ± 00 of 4 0.11None
S2 cells (growing)1 ± 00 of 4 0.13None
Whole fly14 ± 44 of 4

Looking for FBgn0052006. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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