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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052011 through 18771 annotations produced 1 hits



Plexin-B (plexB):

Annotation Number : CG32010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025740 /// FBgn0052010 /// FBgn0052011
Gbrowse : chr4:40881-46839 (-) // 100.0 // /// chr4:54306-316333 (-) // 98.92 // /// chr4:27656-204332 (-) // 98.55 //
Probeset : 1640702_at
Accessions : protein= NP_524616;, nucleotide= NM_079877;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0025740 /// FBgn0052010 /// FBgn0052011.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 22 of 4 2.40Up
Head8 22 of 4 1.60None
Eye5 10 of 4 1.08None
Thoracicoabdominal ganglion8 30 of 4 1.70None
Salivary gland17 30 of 4 3.43Up
Crop13 24 of 4 2.50Up
Midgut5 20 of 4 1.00None
Tubule3 10 of 4 0.70None
Hindgut12 21 of 4 2.40None
Heart14 14 of 4 2.73Up
Fat body28 84 of 4 5.40Up
Ovary1 10 of 4 0.30None
Testis2 00 of 4 0.40None
Male accessory glands18 52 of 4 3.50None
Virgin spermatheca8 10 of 4 1.67None
Mated spermatheca11 33 of 4 2.16None
Adult carcass17 52 of 4 3.40None
Larval CNS15 24 of 4 2.94Up
Larval Salivary gland8 21 of 4 1.58None
Larval midgut1 00 of 4 0.25None
Larval tubule9 11 of 4 1.80None
Larval hindgut6 12 of 4 1.32None
Larval fat body5 10 of 4 1.10None
Larval trachea5 11 of 4 1.05None
Larval carcass2 10 of 4 0.48None
S2 cells (growing)3 00 of 4 0.66None
Whole fly5 12 of 4

Looking for FBgn0052011. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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