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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052016 through 18771 annotations produced 1 hits



(CG32016):

Annotation Number : CG32016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052016
Gbrowse : chr4:972186-979094 (-) // 100.0 //
Probeset : 1639450_s_at
Accessions : protein= NP_726618; /// NP_726619; /// NP_726620; /// NP_726621; /// NP_726622; /// NP_726623;, nucleotide= NM_166796; /// NM_166797; /// NM_166798; /// NM_166799; /// NM_166800; /// NM_166801;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052016.
BioGrid reports that CG32016 interacts with CG4746 CG32016 CG32409 CG32491 CG33113 CG3629 CG17420 CG4068 CG4818 CG4916 CG4994 CG5469 CG5525 CG5920 CG6046 CG6508 CG7015 CG7398 CG7808 CG7954 CG8078 CG8854 CG8978 CG9036 CG9610 CG30425 CG33175 .
TRiP has 1 RNAi stocks for FBgn0052016 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain380 74 of 4 1.20Up
Head209 64 of 4 0.70Down
Eye182 124 of 4 0.58Down
Thoracicoabdominal ganglion315 74 of 4 1.00None
Salivary gland279 54 of 4 0.89None
Crop192 54 of 4 0.60Down
Midgut250 24 of 4 0.80None
Tubule260 94 of 4 0.80Down
Hindgut194 54 of 4 0.60Down
Heart170 34 of 4 0.54Down
Fat body163 94 of 4 0.52Down
Ovary582 84 of 4 1.90Up
Testis234 84 of 4 0.70Down
Male accessory glands235 74 of 4 0.80Down
Virgin spermatheca256 164 of 4 0.82None
Mated spermatheca262 94 of 4 0.84None
Adult carcass147 24 of 4 0.50Down
Larval CNS385 104 of 4 1.23None
Larval Salivary gland333 104 of 4 1.06None
Larval midgut234 114 of 4 0.75Down
Larval tubule315 94 of 4 1.00None
Larval hindgut234 94 of 4 0.75Down
Larval fat body345 164 of 4 1.10None
Larval trachea273 154 of 4 0.87None
Larval carcass278 134 of 4 0.89None
S2 cells (growing)159 24 of 4 0.51Down
Whole fly313 234 of 4

Looking for FBgn0052016. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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