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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052037 through 18771 annotations produced 1 hits



(CG32037):

Annotation Number : CG32037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052037
Gbrowse : chr3L:9482897-9485294 (-) // 100.0 //
Probeset : 1625275_at
Accessions : protein= NP_648326;, nucleotide= NM_140069;
FlyMine data for FBgn0052037.
BDGP gene expression has embryonic in situ data for CG32037: 26 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0052037 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 20 of 4 0.70None
Head16 ± 11 of 4 2.30Up
Eye6 ± 11 of 4 0.92None
Thoracicoabdominal ganglion4 ± 10 of 4 0.60None
Salivary gland16 ± 40 of 4 2.24None
Crop10 ± 30 of 4 1.40None
Midgut5 ± 00 of 4 0.70None
Tubule6 ± 10 of 4 0.90None
Hindgut9 ± 00 of 4 1.20None
Heart11 ± 11 of 4 1.55None
Fat body14 ± 20 of 4 2.00Up
Ovary6 ± 10 of 4 0.90None
Testis7 ± 00 of 4 1.00None
Male accessory glands9 ± 21 of 4 1.30None
Virgin spermatheca5 ± 00 of 4 0.70None
Mated spermatheca7 ± 20 of 4 1.07None
Adult carcass12 ± 40 of 4 1.70None
Larval CNS11 ± 30 of 4 1.55None
Larval Salivary gland8 ± 20 of 4 1.17None
Larval midgut6 ± 00 of 4 0.88None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut7 ± 00 of 4 0.97None
Larval fat body9 ± 30 of 4 1.20None
Larval trachea5 ± 10 of 4 0.71None
Larval carcass4 ± 10 of 4 0.57None
S2 cells (growing)16 ± 10 of 4 2.17Up
Whole fly7 ± 10 of 4

Looking for FBgn0052037. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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