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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052053 through 18771 annotations produced 1 hits



(CG32053):

Annotation Number : CG32053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052053
Gbrowse : chr3L:10083355-10085439 (-) // 100.0 //
Probeset : 1634185_at
Accessions : protein= NP_729587;, nucleotide= NM_168394;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0052053.
BDGP gene expression has embryonic in situ data for CG32053: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head3 00 of 4 0.20Down
Eye1 10 of 4 0.12Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland7 20 of 4 0.52None
Crop3 00 of 4 0.20Down
Midgut129 64 of 4 9.60Up
Tubule4 00 of 4 0.30Down
Hindgut25 14 of 4 1.90Up
Heart2 00 of 4 0.17Down
Fat body6 40 of 4 0.44Down
Ovary2 00 of 4 0.20Down
Testis30 14 of 4 2.30Up
Male accessory glands1 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.10Down
Mated spermatheca3 10 of 4 0.29Down
Adult carcass10 20 of 4 0.80None
Larval CNS2 10 of 4 0.18Down
Larval Salivary gland2 00 of 4 0.22Down
Larval midgut220 104 of 416.37Up
Larval tubule4 10 of 4 0.40Down
Larval hindgut33 24 of 4 2.45Up
Larval fat body6 20 of 4 0.50None
Larval trachea2 20 of 4 0.21Down
Larval carcass1 00 of 4 0.12Down
S2 cells (growing)1 00 of 4 0.09Down
Whole fly13 24 of 4

Looking for FBgn0052053. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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