Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052054 through 18771 annotations produced 1 hits



(CG32054):

Annotation Number : CG32054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052054
Gbrowse : chr3L:10085866-10087838 (-) // 100.0 //
Probeset : 1630056_at
Accessions : protein= NP_729588;, nucleotide= NM_168395;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0052054.
VDRC has 2 RNAi stocks for FBgn0052054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.11Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland6 ± 00 of 4 0.20Down
Crop5 ± 00 of 4 0.20Down
Midgut805 ± 344 of 424.30Up
Tubule10 ± 31 of 4 0.30Down
Hindgut102 ± 54 of 4 3.10Up
Heart1 ± 00 of 4 0.06Down
Fat body4 ± 30 of 4 0.13Down
Ovary2 ± 10 of 4 0.10Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.07Down
Mated spermatheca2 ± 00 of 4 0.06Down
Adult carcass8 ± 31 of 4 0.30Down
Larval CNS2 ± 20 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.13Down
Larval midgut186 ± 124 of 4 5.63Up
Larval tubule10 ± 04 of 4 0.30Down
Larval hindgut34 ± 24 of 4 1.03None
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea3 ± 10 of 4 0.09Down
Larval carcass5 ± 10 of 4 0.16Down
S2 cells (growing)3 ± 00 of 4 0.11Down
Whole fly33 ± 64 of 4

Looking for FBgn0052054. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime