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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052055 through 18771 annotations produced 1 hits



(CG32055):

Annotation Number : CG32055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052055
Gbrowse : chr3L:10211603-10213264 (-) // 100.0 //
Probeset : 1626021_at
Accessions : protein= NP_729599;, nucleotide= NM_168402;
Pathway : 0016942 // insulin-like growth factor binding protein complex // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0052055.
Homophila reports that CG32055 is a close match (8e-11) to human gene ASPN;PLAP1 (NP_060150), a gene associated with {Lumbar disc degeneration}, 603932 (3);{Osteoarthritis, susceptibility to}, 165720 (3).
BioGrid reports that CG32055 interacts with CG9949 .
VDRC has 2 RNAi stocks for FBgn0052055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 04 of 415.40Up
Head7 20 of 4 4.00None
Eye7 11 of 4 3.89None
Thoracicoabdominal ganglion16 14 of 4 9.00Up
Salivary gland4 10 of 4 2.65None
Crop4 00 of 4 2.50None
Midgut1 00 of 4 0.80None
Tubule12 11 of 4 6.90Up
Hindgut2 00 of 4 1.50None
Heart4 01 of 4 2.33Up
Fat body3 00 of 4 1.89None
Ovary1 00 of 4 0.70None
Testis1 00 of 4 0.80None
Male accessory glands8 20 of 4 4.70None
Virgin spermatheca3 00 of 4 1.78None
Mated spermatheca1 00 of 4 0.61None
Adult carcass6 20 of 4 3.30None
Larval CNS8 11 of 4 4.82Up
Larval Salivary gland3 10 of 4 2.00None
Larval midgut1 00 of 4 0.86None
Larval tubule10 01 of 4 5.50Up
Larval hindgut1 00 of 4 0.75None
Larval fat body6 20 of 4 3.40None
Larval trachea3 20 of 4 1.86None
Larval carcass6 20 of 4 3.75None
S2 cells (growing)1 00 of 4 1.04None
Whole fly1 00 of 4

Looking for FBgn0052055. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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