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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052064 through 18771 annotations produced 1 hits



/// CG32064 (CG32064 /// DsimGD14244):

Annotation Number : CG32064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052064
Gbrowse : chr3L:10483960-10486035 (+) // 100.0 //
Probeset : 1638296_at
Accessions : protein= NP_729613;, nucleotide= NM_168411;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0052064.
BDGP gene expression has embryonic in situ data for CG32064: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0052064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye4 10 of 4 0.01Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland7 40 of 4 0.01Down
Crop5 10 of 4 0.00Down
Midgut5 10 of 4 0.00Down
Tubule7 10 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart3 10 of 4 0.01Down
Fat body4 20 of 4 0.01Down
Ovary2 10 of 4 0.00Down
Testis3586 1424 of 4 5.90Up
Male accessory glands9 40 of 4 0.00Down
Virgin spermatheca7 10 of 4 0.01Down
Mated spermatheca7 10 of 4 0.01Down
Adult carcass22 63 of 4 0.00Down
Larval CNS2 20 of 4 0.00Down
Larval Salivary gland5 10 of 4 0.01Down
Larval midgut16 30 of 4 0.03Down
Larval tubule7 10 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body759 3964 of 4 1.20None
Larval trachea30 383 of 4 0.05Down
Larval carcass5 10 of 4 0.01Down
S2 cells (growing)7 10 of 4 0.01Down
Whole fly607 284 of 4

Looking for FBgn0052064. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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