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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052066 through 18771 annotations produced 1 hits



CG6487 (CG32066):

Annotation Number : CG32066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052066
Gbrowse : chr3L:10633492-10654113 (-) // 100.0 //
Probeset : 1641353_s_at
Accessions : protein= NP_729619; /// NP_729620;, nucleotide= NM_168416; /// NM_168417;
FlyMine data for FBgn0052066.
BDGP gene expression has embryonic in situ data for CG32066: 22 pix of staining in 18 body parts.
VDRC has 2 RNAi stocks for FBgn0052066 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain408 ± 214 of 4 1.40None
Head195 ± 134 of 4 0.70None
Eye109 ± 64 of 4 0.39Down
Thoracicoabdominal ganglion256 ± 74 of 4 0.90None
Salivary gland125 ± 104 of 4 0.44Down
Crop641 ± 274 of 4 2.30Up
Midgut419 ± 234 of 4 1.50None
Tubule336 ± 84 of 4 1.20Up
Hindgut233 ± 64 of 4 0.80None
Heart281 ± 174 of 4 0.99None
Fat body217 ± 294 of 4 0.77None
Ovary326 ± 64 of 4 1.20None
Testis62 ± 24 of 4 0.20Down
Male accessory glands81 ± 64 of 4 0.30Down
Virgin spermatheca251 ± 224 of 4 0.88None
Mated spermatheca257 ± 134 of 4 0.91None
Adult carcass117 ± 144 of 4 0.40Down
Larval CNS303 ± 444 of 4 1.07None
Larval Salivary gland55 ± 104 of 4 0.20Down
Larval midgut330 ± 94 of 4 1.17None
Larval tubule396 ± 254 of 4 1.40None
Larval hindgut194 ± 34 of 4 0.69None
Larval fat body161 ± 124 of 4 0.60None
Larval trachea170 ± 454 of 4 0.60None
Larval carcass97 ± 64 of 4 0.34Down
S2 cells (growing)666 ± 324 of 4 2.35Up
Whole fly283 ± 504 of 4

Looking for FBgn0052066. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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