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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052068 through 18771 annotations produced 1 hits



(CG32068):

Annotation Number : CG32068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052068
Gbrowse : chr3L:10656488-10657536 (+) // 100.0 //
Probeset : 1639857_at
Accessions : protein= NP_001097577;, nucleotide= NM_001104107;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred fro
FlyMine data for FBgn0052068.
BioGrid reports that CG32068 interacts with CG4896 CG5203 CG5232 CG6945 CG8057 CG8292 CG8316 CG9099 .
VDRC has 1 RNAi stocks for FBgn0052068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 44 of 4 0.30Down
Head1008 554 of 4 1.80Up
Eye756 414 of 4 1.31Up
Thoracicoabdominal ganglion280 14 of 4 0.50Down
Salivary gland1984 544 of 4 3.45Up
Crop809 234 of 4 1.40Up
Midgut1287 594 of 4 2.20Up
Tubule3502 1444 of 4 6.10Up
Hindgut1099 144 of 4 1.90Up
Heart1355 684 of 4 2.35Up
Fat body2070 694 of 4 3.59Up
Ovary372 114 of 4 0.60Down
Testis184 74 of 4 0.30Down
Male accessory glands1103 164 of 4 1.90Up
Virgin spermatheca2133 774 of 4 3.70Up
Mated spermatheca1737 434 of 4 3.02Up
Adult carcass1190 804 of 4 2.10Up
Larval CNS220 144 of 4 0.38Down
Larval Salivary gland605 334 of 4 1.05None
Larval midgut676 194 of 4 1.17None
Larval tubule1802 274 of 4 3.10Up
Larval hindgut771 394 of 4 1.34Up
Larval fat body1164 1214 of 4 2.00Up
Larval trachea687 1224 of 4 1.19None
Larval carcass587 464 of 4 1.02None
S2 cells (growing)324 114 of 4 0.56Down
Whole fly576 384 of 4

Looking for FBgn0052068. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime