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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052079 through 18771 annotations produced 1 hits



(CG32079):

Annotation Number : CG32079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052079
Gbrowse : chr3L:11018660-11020432 (+) // 100.0 //
Probeset : 1624749_at
Accessions : protein= NP_729645;, nucleotide= NM_168429;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0052079.
VDRC has 2 RNAi stocks for FBgn0052079 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 1.20None
Head4 ± 10 of 4 0.90None
Eye3 ± 20 of 4 0.76None
Thoracicoabdominal ganglion4 ± 10 of 4 0.90None
Salivary gland11 ± 40 of 4 2.27None
Crop5 ± 20 of 4 1.20None
Midgut8 ± 20 of 4 1.70None
Tubule8 ± 00 of 4 1.70Up
Hindgut6 ± 20 of 4 1.30None
Heart6 ± 00 of 4 1.35None
Fat body13 ± 32 of 4 2.79Up
Ovary2 ± 00 of 4 0.40Down
Testis28 ± 04 of 4 5.80Up
Male accessory glands5 ± 10 of 4 1.10None
Virgin spermatheca13 ± 14 of 4 2.82Up
Mated spermatheca17 ± 43 of 4 3.45None
Adult carcass5 ± 20 of 4 1.10None
Larval CNS5 ± 20 of 4 1.21None
Larval Salivary gland8 ± 20 of 4 1.66None
Larval midgut5 ± 10 of 4 1.17None
Larval tubule6 ± 10 of 4 1.30None
Larval hindgut5 ± 10 of 4 1.18None
Larval fat body6 ± 20 of 4 1.40None
Larval trachea3 ± 10 of 4 0.80None
Larval carcass5 ± 10 of 4 1.09None
S2 cells (growing)3 ± 10 of 4 0.77None
Whole fly4 ± 00 of 4

Looking for FBgn0052079. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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