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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052085 through 18771 annotations produced 1 hits



(CG32085):

Annotation Number : CG32085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052085
Gbrowse : chr3L:11643599-11673440 (-) // 100.0 //
Probeset : 1628373_at
Accessions : protein= NP_729732;, nucleotide= NM_168470;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0052085.
TRiP has 1 RNAi stocks for FBgn0052085 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain243 ± 54 of 4 8.40Up
Head58 ± 44 of 4 2.00Up
Eye96 ± 104 of 4 3.30Up
Thoracicoabdominal ganglion225 ± 134 of 4 7.80Up
Salivary gland21 ± 51 of 4 0.75None
Crop12 ± 24 of 4 0.40Down
Midgut8 ± 12 of 4 0.30Down
Tubule9 ± 02 of 4 0.30Down
Hindgut9 ± 13 of 4 0.30Down
Heart11 ± 14 of 4 0.41Down
Fat body26 ± 124 of 4 0.90None
Ovary5 ± 01 of 4 0.20Down
Testis243 ± 204 of 4 8.40Up
Male accessory glands49 ± 14 of 4 1.70Up
Virgin spermatheca33 ± 14 of 4 1.16None
Mated spermatheca35 ± 44 of 4 1.20None
Adult carcass30 ± 34 of 4 1.00None
Larval CNS87 ± 84 of 4 3.00Up
Larval Salivary gland12 ± 13 of 4 0.42Down
Larval midgut13 ± 14 of 4 0.45Down
Larval tubule9 ± 21 of 4 0.30Down
Larval hindgut12 ± 03 of 4 0.41Down
Larval fat body59 ± 224 of 4 2.00None
Larval trachea11 ± 34 of 4 0.40Down
Larval carcass57 ± 34 of 4 1.99Up
S2 cells (growing)28 ± 14 of 4 0.97None
Whole fly29 ± 34 of 4

Looking for FBgn0052085. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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