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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052086 through 18771 annotations produced 1 hits


Annotation Number : CG32086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052086
Gbrowse : chr3L:11575491-11577164 (-) // 100.0 //
Probeset : 1623717_at
Accessions : protein= NP_729720;, nucleotide= NM_168464;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052086.
BDGP gene expression has embryonic in situ data for CG32086: 4 pix of staining in 1 body parts.
BioGrid reports that CG32086 interacts with CG3610 CG4570 CG4577 CG5433 CG7611 CG4651 CG5289 CG6156 CG7238 CG7352 CG7761 CG8120 CG8365 CG9173 .
VDRC has 2 RNAi stocks for FBgn0052086 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head3 11 of 4 0.10Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland10 50 of 4 0.29Down
Crop5 11 of 4 0.20Down
Midgut5 11 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut4 11 of 4 0.10Down
Heart1 10 of 4 0.04Down
Fat body4 20 of 4 0.13Down
Ovary1 10 of 4 0.10Down
Testis420 214 of 412.10Up
Male accessory glands6 10 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.17Down
Mated spermatheca4 10 of 4 0.12Down
Adult carcass4 00 of 4 0.10Down
Larval CNS2 01 of 4 0.08Down
Larval Salivary gland4 10 of 4 0.11Down
Larval midgut6 10 of 4 0.19Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 01 of 4 0.11Down
Larval fat body37 223 of 4 1.10None
Larval trachea3 21 of 4 0.11Down
Larval carcass2 10 of 4 0.09Down
S2 cells (growing)3 00 of 4 0.10Down
Whole fly34 14 of 4

Looking for FBgn0052086. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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