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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052088 through 18771 annotations produced 1 hits



(CG32088):

Annotation Number : CG32088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052088
Gbrowse : chr3L:11721516-11725041 (+) // 100.0 //
Probeset : 1633982_at
Accessions : protein= NP_729739;, nucleotide= NM_168473;
FlyMine data for FBgn0052088.
VDRC has 2 RNAi stocks for FBgn0052088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.50None
Head3 ± 10 of 4 0.60None
Eye5 ± 11 of 4 1.03None
Thoracicoabdominal ganglion5 ± 11 of 4 1.00None
Salivary gland11 ± 50 of 4 2.20None
Crop6 ± 10 of 4 1.20None
Midgut9 ± 20 of 4 1.80None
Tubule5 ± 10 of 4 1.10None
Hindgut2 ± 10 of 4 0.50None
Heart2 ± 10 of 4 0.50None
Fat body8 ± 30 of 4 1.54None
Ovary2 ± 00 of 4 0.40Down
Testis10 ± 12 of 4 1.90Up
Male accessory glands4 ± 10 of 4 0.90None
Virgin spermatheca7 ± 10 of 4 1.49None
Mated spermatheca3 ± 10 of 4 0.75None
Adult carcass8 ± 20 of 4 1.60None
Larval CNS3 ± 21 of 4 0.69None
Larval Salivary gland4 ± 20 of 4 0.87None
Larval midgut7 ± 21 of 4 1.45None
Larval tubule5 ± 20 of 4 1.00None
Larval hindgut3 ± 11 of 4 0.65None
Larval fat body10 ± 02 of 4 2.00Up
Larval trachea7 ± 11 of 4 1.34None
Larval carcass3 ± 10 of 4 0.58None
S2 cells (growing)7 ± 11 of 4 1.36None
Whole fly5 ± 10 of 4

Looking for FBgn0052088. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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